Transcript: lnc-HSFY2-1:1

Basic information

LNCipedia transcript ID: lnc-HSFY2-1:1 
LNCipedia gene ID: lnc-HSFY2-1
Location (hg38): chrY:18772708-18828662
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1483 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000505047.1; AC007379.5-001; OTTHUMT00000100008.1; NONHSAT139594
Alternative gene names: ENSG00000248395.1; AC007379.5; OTTHUMG00000041952.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3201 non-coding 
CPAT coding probability 4.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSFY2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSFY2-1:1
4.0 lnc-HSFY2-1:1
4.1 lnc-HSFY2-1:1
5.0 lnc-HSFY2-1:1
5.1 lnc-DAZ1-76:1
5.2 lnc-HSFY2-1:1