Transcript: lnc-HSP90AA1-1:3

Basic information

LNCipedia transcript ID: lnc-HSP90AA1-1:3 
LNCipedia gene ID: lnc-HSP90AA1-1
Location (hg38): chr14:102036315-102044403
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000557551.1; RP11-1017G21.4-001; OTTHUMT00000414587.1; NONHSAT040069
Alternative gene names: ENSG00000258959.1; RP11-1017G21.4; OTTHUMG00000171646.2; AL118558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0002 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSP90AA1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSP90AA1-1:3
4.0 lnc-HSP90AA1-1:3
4.1 lnc-HSP90AA1-1:3
5.0 lnc-HSP90AA1-1:3
5.1 lnc-HSP90AA1-1:3
5.2 lnc-HSP90AA1-1:3