Transcript: lnc-HSPA12A-1:13

Basic information

LNCipedia transcript ID: lnc-HSPA12A-1:13 
LNCipedia gene ID: lnc-HSPA12A-1
Location (hg38): chr10:116833001-116849701
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 657 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000453491.1; RP11-539I5.1-001; OTTHUMT00000050549.1; NONHSAT016498
Alternative gene names: ENSG00000225302.1; RP11-539I5.1; OTTHUMG00000019111.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.5662 non-coding 
CPAT coding probability 6.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPA12A-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1598-1:2
4.0 lnc-KIAA1598-1:2
4.1 lnc-KIAA1598-1:2
5.0 lnc-KIAA1598-1:2
5.1 lnc-NSMCE4A-89:12
5.2 lnc-HSPA12A-1:13