Transcript: lnc-HSPB6-1:2

Basic information

LNCipedia transcript ID: lnc-HSPB6-1:2 
LNCipedia gene ID: lnc-HSPB6-1
Ensembl Gene ID: ENSG00000267439
Ensembl Transcript ID: ENST00000591091
Location (hg38): chr19:35747225-35753415
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1712 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT065908; ENST00000591091.1
Alternative gene names: ENSG00000267439.1; AC002398.11; AD000671.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.2405 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPB6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSPB6-1:2
4.0 lnc-HSPB6-1:2
4.1 lnc-HSPB6-1:2
5.0 lnc-HSPB6-1:2
5.1 lnc-SCGB2B2-53:2
5.2 lnc-HSPB6-1:2