Transcript: lnc-HSPH1-1:2

Basic information

LNCipedia transcript ID: lnc-HSPH1-1:2 
LNCipedia gene ID: lnc-HSPH1-1
Location (hg38): chr13:31052196-31053570
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021964; NONHSAT032837
Alternative gene names: XLOC_010561; linc-HMGB1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.4589 non-coding 
CPAT coding probability 18.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPH1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSPH1-1:2
3.1 lnc-HSPH1-1:2
4.0 lnc-HSPH1-1:2
4.1 lnc-HSPH1-1:2
5.0 lnc-HSPH1-1:2
5.1 lnc-UBL3-1:4
5.2 lnc-HSPH1-1:2