Transcript: lnc-HTR7-1:1

Basic information

LNCipedia transcript ID: lnc-HTR7-1:1 
LNCipedia gene ID: lnc-HTR7-1
Ensembl Gene ID: ENSG00000236373
Ensembl Transcript ID: ENST00000418379
RefSeq ID: NR_110657
Location (hg38): chr10:90402521-90540805
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 981 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00018021; ENST00000418379; ENST00000418379.1; RP11-15K3.1-001; OTTHUMT00000049342.1; NONHSAT015586; NR_110657; NR_110657.1
Alternative gene names: XLOC_008901; linc-PANK1-1; ENSG00000236373; RP11-15K3.1; ENSG00000236373.1; OTTHUMG00000018731.1; AL391704.2; LOC101926942


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.7086 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HTR7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HTR7-1:1
3.1 lnc-HTR7-1:1
4.0 lnc-HTR7-1:1
4.1 lnc-HTR7-1:1
5.0 lnc-HTR7-1:1
5.1 lnc-HTR7-6:4
5.2 lnc-HTR7-1:1