Transcript: lnc-HYI-3:1

Basic information

LNCipedia transcript ID: lnc-HYI-3:1 
LNCipedia gene ID: lnc-HYI-3
Ensembl Gene ID: ENSG00000229444
Ensembl Transcript ID: ENST00000437753
RefSeq ID: NR_125986
Location (hg38): chr1:43709392-43727343
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 469 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000437753.1; RP11-184I16.4-001; OTTHUMT00000020709.1; NONHSAT002824; NR_125986.1
Alternative gene names: ENSG00000229444.1; RP11-184I16.4; OTTHUMG00000007703.1; AL451062.1; LOC101929592


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.7497 non-coding 
CPAT coding probability 5.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HYI-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HYI-3:1
4.0 lnc-HYI-3:1
4.1 lnc-HYI-3:1
5.0 lnc-HYI-3:1
5.1 lnc-C1orf210-8:1
5.2 lnc-HYI-3:1