Transcript: lnc-IAH1-1:1

Basic information

LNCipedia transcript ID: lnc-IAH1-1:1 
LNCipedia gene ID: lnc-IAH1-1
Ensembl Gene ID: ENSG00000239300
Ensembl Transcript ID: ENST00000472619
Location (hg38): chr2:9505445-9512412
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 262 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000472619.1; RP11-400L8.2-002; OTTHUMT00000353335.1; NONHSAT069051
Alternative gene names: ENSG00000239300.1; RP11-400L8.2; OTTHUMG00000159106.1; ENSG00000239300.5; AC080162.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.1654 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IAH1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IAH1-1:1
4.0 lnc-IAH1-1:1
4.1 lnc-IAH1-1:1
5.0 lnc-IAH1-1:1
5.1 lnc-SNX17-210:2
5.2 lnc-IAH1-1:1