Transcript: lnc-ICA1-1:3

Basic information

LNCipedia transcript ID: lnc-ICA1-1:3 
LNCipedia gene ID: lnc-ICA1-1
Ensembl Gene ID: ENSG00000234141
Ensembl Transcript ID: ENST00000451066
Location (hg38): chr7:7949853-7950709
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 692 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451066.1; AC009473.1-001; OTTHUMT00000324926.1; NONHSAT119139
Alternative gene names: ENSG00000234141.1; AC009473.1; OTTHUMG00000152026.1; AC006042.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.491 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICA1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ICA1-2:1
4.0 lnc-ICA1-1:3
4.1 lnc-ICA1-1:3
5.0 lnc-ICA1-1:3
5.1 lnc-RNF216-39:12
5.2 lnc-ICA1-1:3