Transcript: lnc-ICAM2-1:5

Basic information

LNCipedia transcript ID: lnc-ICAM2-1:5 
LNCipedia gene ID: lnc-ICAM2-1
Location (hg38): chr17:64039150-64041843
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2694 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000583175.1; RP11-214C8.5-001; OTTHUMT00000443733.1; NONHSAT055267
Alternative gene names: ENSG00000263899.1; RP11-214C8.5; OTTHUMG00000178878.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.4757 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICAM2-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERN1-1:1
4.0 lnc-ERN1-1:1
4.1 lnc-ERN1-1:1
5.0 lnc-ERN1-1:1
5.1 lnc-CYB561-27:1
5.2 lnc-ICAM2-1:5