Transcript: lnc-IDNK-3:9

Basic information

LNCipedia transcript ID: lnc-IDNK-3:9 
LNCipedia gene ID: lnc-IDNK-3
Ensembl Gene ID: ENSG00000237529
Ensembl Transcript ID: ENST00000458111
Location (hg38): chr9:83276376-83279499
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 527 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458111.1; RP11-439K3.3-001; OTTHUMT00000052828.1; NONHSAT132736
Alternative gene names: ENSG00000237529.1; RP11-439K3.3; OTTHUMG00000020102.1; AL137847.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.4079 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IDNK-3:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf103-2:1
4.0 lnc-C9orf103-2:1
4.1 lnc-C9orf103-3:10
5.0 lnc-C9orf103-3:10
5.1 lnc-SECISBP2-82:10
5.2 lnc-IDNK-3:9