Transcript: lnc-IER3-15:1

Basic information

LNCipedia transcript ID: lnc-IER3-15:1 
LNCipedia gene ID: lnc-IER3-15
Location (hg38): chr6:30837396-30848302
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4051 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT108684
Alternative gene names: bQB230F21.2; FLJ40693; bQB10J12.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3799 non-coding 
CPAT coding probability 12.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IER3-15:1 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  2. Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SFTA2-12:3
4.0 lnc-SFTA2-12:3
4.1 LINC00243:3
5.0 LINC00243:3
5.1 lnc-SFTA2-15:1
5.2 lnc-IER3-15:1