Transcript: lnc-IFI16-1:1

Basic information

LNCipedia transcript ID: lnc-IFI16-1:1 
LNCipedia gene ID: lnc-IFI16-1
Location (hg38): chr1:159097011-159097615
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 605 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_ge08_CD244_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.7169 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFI16-1:1 no no no no

Available literature

  1. Wang (2015), Long noncoding RNA derived from CD244 signaling epigenetically controls CD8+ T-cell immune responses in tuberculosis infection., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFI16-1:1
4.0 lnc-IFI16-1:1
4.1 lnc-IFI16-1:1
5.0 lnc-IFI16-1:1
5.1 lnc-APCS-8:1
5.2 lnc-IFI16-1:1