Transcript: lnc-IFI44-1:1

Basic information

LNCipedia transcript ID: lnc-IFI44-1:1 
LNCipedia gene ID: lnc-IFI44-1
Location (hg38): chr1:79323769-79324849
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000238; ENST00000415629; ENST00000415629.1; RP4-726F1.1-001; OTTHUMT00000026864.1; NONHSAT004097
Alternative gene names: XLOC_000267; linc-LPHN2-3; ENSG00000235011; RP4-726F1.1; ENSG00000235011.1; OTTHUMG00000009742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.768 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFI44-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFI44-1:1
3.1 lnc-IFI44-1:1
4.0 lnc-IFI44-1:1
4.1 lnc-IFI44-1:1
5.0 lnc-IFI44-1:1
5.1 lnc-GIPC2-11:2
5.2 lnc-IFI44-1:1