Transcript: lnc-IFNK-3:1

Basic information

LNCipedia transcript ID: lnc-IFNK-3:1 
LNCipedia gene ID: lnc-IFNK-3
Ensembl Gene ID: ENSG00000260390
Ensembl Transcript ID: ENST00000562922
Location (hg38): chr9:27829276-27844481
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2084 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015573; ENST00000562922.1; RP11-575I8.1-001; OTTHUMT00000431069.1; NONHSAT130621
Alternative gene names: XLOC_007309; linc-ACO1-1; ENSG00000260390.1; RP11-575I8.1; OTTHUMG00000175783.1; AL360014.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.0481 non-coding 
CPAT coding probability 5.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFNK-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFNK-2:1
3.1 lnc-IFNK-3:1
4.0 lnc-IFNK-3:1
4.1 lnc-IFNK-3:1
5.0 lnc-IFNK-3:1
5.1 lnc-RECK-94:1
5.2 lnc-IFNK-3:1