Transcript: lnc-IFT20-4:1

Basic information

LNCipedia transcript ID: lnc-IFT20-4:1 
LNCipedia gene ID: lnc-IFT20-4
Location (hg38): chr17:28230576-28234238
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3088 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00025599
Alternative gene names: XLOC_012427; linc-C17orf108-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 80.6764 coding 
CPAT coding probability 75.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IFT20-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFT20-3:1
3.1 lnc-IFT20-4:1
4.0 lnc-IFT20-4:1
4.1 lnc-IFT20-4:1
5.0 lnc-IFT20-4:1
5.1 lnc-SLC6A4-102:2
5.2 lnc-IFT20-4:1