Transcript: lnc-IFT20-4:2

Basic information

LNCipedia transcript ID: lnc-IFT20-4:2 
LNCipedia gene ID: lnc-IFT20-4
Ensembl Gene ID: ENSG00000267259
Ensembl Transcript ID: ENST00000592016
Location (hg38): chr17:28232590-28235281
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2692 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592016.1
Alternative gene names: ENSG00000267259.1; CTD-2008P7.9; AC061975.7; ERVE-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 104.7982 coding 
CPAT coding probability 94.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IFT20-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFT20-4:2
4.0 lnc-IFT20-4:2
4.1 lnc-IFT20-4:2
5.0 lnc-IFT20-4:2
5.1 lnc-SLC6A4-102:1
5.2 lnc-IFT20-4:2