Transcript: lnc-IFT46-1:5

Basic information

LNCipedia transcript ID: lnc-IFT46-1:5 
LNCipedia gene ID: lnc-IFT46-1
Ensembl Gene ID: ENSG00000255435
Ensembl Transcript ID: ENST00000528578
Location (hg38): chr11:118519496-118530569
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 423 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528578.1; RP11-770J1.3-002; OTTHUMT00000389625.1; NONHSAT024488; ENST00000528578.5
Alternative gene names: ENSG00000255435.2; RP11-770J1.3; OTTHUMG00000166407.2; ENSG00000255435.6; AP001267.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.4173 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFT46-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFT46-1:5
4.0 lnc-IFT46-1:5
4.1 lnc-IFT46-1:5
5.0 lnc-IFT46-1:5
5.1 lnc-SCN4B-23:22
5.2 lnc-IFT46-1:5