Transcript: lnc-IGFBP2-8:3

Basic information

LNCipedia transcript ID: lnc-IGFBP2-8:3 
LNCipedia gene ID: lnc-IGFBP2-8
Location (hg38): chr2:216987970-216996564
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004025; NONHSAT076846
Alternative gene names: XLOC_001863; linc-RUFY4-3

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.5165 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP2-8:3 no no no no

Available literature

  1. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007557.1.1-3:1
3.1 lnc-AC007557.1.1-3:2
4.0 lnc-AC007557.1.1-3:2
4.1 lnc-AC007557.1.1-3:2
5.0 lnc-AC007557.1.1-3:2
5.1 lnc-TMEM169-34:7
5.2 lnc-IGFBP2-8:3