Transcript: lnc-IGFBP2-8:4

Basic information

LNCipedia transcript ID: lnc-IGFBP2-8:4 
LNCipedia gene ID: lnc-IGFBP2-8
Ensembl Gene ID: ENSG00000259855
Ensembl Transcript ID: ENST00000564299
Location (hg38): chr2:216995906-216996490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564299.1; RP11-574O16.1-001; OTTHUMT00000431735.1; NONHSAT076847
Alternative gene names: ENSG00000259855.1; RP11-574O16.1; OTTHUMG00000176299.1; AC007749.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.1486 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP2-8:4 no no no no

Available literature

  1. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007557.1.1-3:3
4.0 lnc-AC007557.1.1-3:3
4.1 lnc-AC007557.1.1-3:3
5.0 lnc-AC007557.1.1-3:3
5.1 lnc-TMEM169-34:8
5.2 lnc-IGFBP2-8:4