Transcript: lnc-IGFBP4-1:3

Basic information

LNCipedia transcript ID: lnc-IGFBP4-1:3 
LNCipedia gene ID: lnc-IGFBP4-1
Location (hg38): chr17:40517026-40527001
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1013 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00025120
Alternative gene names: XLOC_012197; linc-TMEM99-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.5982 non-coding 
CPAT coding probability 23.94% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.215204481
covF1Prop0.107142857
seqAAMNRHHTEVFVRKKVDAGILSSNRSLPVSAD

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGFBP4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP4-1:2
3.1 lnc-IGFBP4-1:3
4.0 lnc-IGFBP4-1:3
4.1 lnc-IGFBP4-1:3
5.0 lnc-IGFBP4-1:3
5.1 lnc-THRA-32:2
5.2 lnc-IGFBP4-1:3