Transcript: lnc-IGFBP7-5:5

Basic information

LNCipedia transcript ID: lnc-IGFBP7-5:5 
LNCipedia gene ID: lnc-IGFBP7-5
Location (hg38): chr4:58987187-58988118
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 653 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00007768; ENST00000512911; ENST00000512911.1; RP11-340A13.1-001; OTTHUMT00000364298.2; NONHSAT096584
Alternative gene names: XLOC_003962; linc-IGFBP7-7; ENSG00000249382; RP11-340A13.1; ENSG00000249382.1; OTTHUMG00000161246.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2559 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP7-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP7-4:5
3.1 lnc-IGFBP7-5:5
4.0 lnc-IGFBP7-5:5
4.1 lnc-IGFBP7-5:5
5.0 lnc-IGFBP7-5:5
5.1 lnc-CENPC-68:7
5.2 lnc-IGFBP7-5:5