Transcript: lnc-IGFL1-1:2

Basic information

LNCipedia transcript ID: lnc-IGFL1-1:2 
LNCipedia gene ID: lnc-IGFL1-1
Ensembl Gene ID: ENSG00000268460
Ensembl Transcript ID: ENST00000593980
Location (hg38): chr19:46203426-46212575
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1316 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00026793; ENST00000446137; NONHSAT066864; ENST00000593980.1
Alternative gene names: XLOC_013100; linc-IGFL1-1; ENSG00000236057; AC006262.1; ENSG00000268460.1; AC006262.6; DKFZp434J0226


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.7657 non-coding 
CPAT coding probability 31.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFL1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFL1-1:2
3.1 lnc-IGFL1-1:2
4.0 lnc-IGFL1-1:2
4.1 lnc-IGFL1-1:2
5.0 lnc-IGFL1-1:2
5.1 lnc-BHMG1-12:2
5.2 lnc-IGFL1-1:2