Transcript: lnc-IGHMBP2-4:1

Basic information

LNCipedia transcript ID: lnc-IGHMBP2-4:1 
LNCipedia gene ID: lnc-IGHMBP2-4
Ensembl Gene ID: ENSG00000260895
Ensembl Transcript ID: ENST00000567925
Location (hg38): chr11:69103493-69109094
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 622 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567925.1; RP11-554A11.7-001; OTTHUMT00000421419.1; NONHSAT022570
Alternative gene names: ENSG00000260895.1; RP11-554A11.7; OTTHUMG00000172941.1; AP003071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.3533 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGHMBP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TPCN2-1:1
4.0 lnc-TPCN2-1:1
4.1 lnc-TPCN2-1:1
5.0 lnc-TPCN2-1:1
5.1 lnc-TCIRG1-23:1
5.2 lnc-IGHMBP2-4:1