Transcript: lnc-IGLL1-1:18

Basic information

LNCipedia transcript ID: lnc-IGLL1-1:18 
LNCipedia gene ID: lnc-IGLL1-1
Ensembl Gene ID: ENSG00000228315
Ensembl Transcript ID: ENST00000451837
Location (hg38): chr22:23638487-23717321
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3234 bp
Exons: 12
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT083924; ENST00000451837.1; ENST00000451837.5
Alternative gene names: ENSG00000228315.7; GUSBP11; ENSG00000228315.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 164.4442 coding 
CPAT coding probability 59.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGLL1-1:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf43-1:12
4.0 lnc-C22orf43-1:12
4.1 lnc-IGLL1-1:18
5.0 lnc-IGLL1-1:18
5.1 lnc-SCARF2-65:17
5.2 lnc-IGLL1-1:18