Transcript: lnc-IGLL1-1:48

Basic information

LNCipedia transcript ID: lnc-IGLL1-1:48 
LNCipedia gene ID: lnc-IGLL1-1
Ensembl Gene ID: ENSG00000273000
Ensembl Transcript ID: ENST00000434893
Location (hg38): chr22:23653170-23686914
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT083948; ENST00000434893.1
Alternative gene names: ENSG00000273000.1; KB-1572G7.2; ENSG00000273000.5; AP000347.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 117.5616 coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGLL1-1:48 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf43-1:39
4.0 lnc-C22orf43-1:39
4.1 lnc-IGLL1-1:48
5.0 lnc-IGLL1-1:48
5.1 lnc-SCARF2-65:47
5.2 lnc-IGLL1-1:48