Transcript: lnc-IGLL1-1:56

Basic information

LNCipedia transcript ID: lnc-IGLL1-1:56 
LNCipedia gene ID: lnc-IGLL1-1
Location (hg38): chr22:23631884-23638941
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 674 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000390329.2; AP000346.2-001; OTTHUMT00000320347.1; NONHSAT083920
Alternative gene names: ENSG00000211683.2; AP000346.2; OTTHUMG00000150864.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8277 non-coding 
CPAT coding probability 7.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGLL1-1:56 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf43-1:1
4.0 lnc-C22orf43-1:1
4.1 lnc-IGLL1-1:56
5.0 lnc-IGLL1-1:56
5.1 lnc-SCARF2-65:55
5.2 lnc-IGLL1-1:56