Transcript: lnc-IGSF5-1:2

Basic information

LNCipedia transcript ID: lnc-IGSF5-1:2 
LNCipedia gene ID: lnc-IGSF5-1
Ensembl Gene ID: ENSG00000231713
Ensembl Transcript ID: ENST00000419826
Location (hg38): chr21:39727846-39729684
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419826; ENST00000419826.2; AF064860.7-002; OTTHUMT00000195004.2; NONHSAT082212
Alternative gene names: ENSG00000231713; AF064860.7; ENSG00000231713.2; OTTHUMG00000086723.2; AF064860.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.2016 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGSF5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGSF5-1:3
3.1 lnc-IGSF5-1:2
4.0 lnc-IGSF5-1:2
4.1 lnc-IGSF5-1:2
5.0 lnc-IGSF5-1:2
5.1 lnc-PDE9A-62:8
5.2 lnc-IGSF5-1:2