Transcript: lnc-IGSF9B-13:1

Basic information

LNCipedia transcript ID: lnc-IGSF9B-13:1 
LNCipedia gene ID: lnc-IGSF9B-13
Location (hg38): chr11:133896432-133903010
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6579 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1554:1
Alternative gene names: LINC00947


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.0682 non-coding 
CPAT coding probability 84.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGSF9B-13:1 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 MIR4697HG:1
4.1 MIR4697HG:1
5.0 MIR4697HG:1
5.1 lnc-IGSF9B-2:1
5.2 lnc-IGSF9B-13:1