Transcript: lnc-IGSF9B-13:2

Basic information

LNCipedia transcript ID: lnc-IGSF9B-13:2 
LNCipedia gene ID: lnc-IGSF9B-13
RefSeq ID: NR_024344
Location (hg38): chr11:133896435-133901740
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5306 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT025216; NR_024344; NR_024344.1
Alternative gene names: LINC00947; MIR4697HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.5377 non-coding 
CPAT coding probability 60.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGSF9B-13:2 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-259P6.1.1-2:1
4.0 MIR4697HG:2
4.1 MIR4697HG:2
5.0 MIR4697HG:2
5.1 lnc-IGSF9B-2:2
5.2 lnc-IGSF9B-13:2