Transcript: lnc-IKZF1-2:2

Basic information

LNCipedia transcript ID: lnc-IKZF1-2:2 
LNCipedia gene ID: lnc-IKZF1-2
Ensembl Gene ID: ENSG00000228204
Ensembl Transcript ID: ENST00000582616
Location (hg38): chr7:51017463-51022990
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 762 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582616.1; RP4-724E13.2-002; OTTHUMT00000447749.1; NONHSAT120583
Alternative gene names: ENSG00000228204.2; RP4-724E13.2; OTTHUMG00000155997.3; AC004830.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.1213 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IKZF1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IKZF1-2:2
4.0 lnc-IKZF1-2:2
4.1 lnc-IKZF1-2:2
5.0 lnc-IKZF1-2:2
5.1 lnc-CCT6A-83:2
5.2 lnc-IKZF1-2:2