Transcript: lnc-IL16-11:3

Basic information

LNCipedia transcript ID: lnc-IL16-11:3 
HGNC Gene Symbol: lnc-IL16-11    
HGNC Full Gene Name: TMC3 antisense RNA 1
Ensembl Gene ID: ENSG00000259343
Ensembl Transcript ID: ENST00000559277
Location (hg38): chr15:81341648-81343150
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559277.1; RP11-761I4.3-004; OTTHUMT00000417794.1; NONHSAT047737
Alternative gene names: ENSG00000259343.1; RP11-761I4.3; OTTHUMG00000172313.1; ENSG00000259343.5; TMC3-AS1; ; ENSG00000259343.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.3198 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL16-11:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL16-1:4
4.0 TMC3-AS1:5
4.1 TMC3-AS1:5
5.0 TMC3-AS1:5
5.1 lnc-CFAP161-27:3
5.2 lnc-IL16-11:3