Transcript: lnc-IL16-12:2

Basic information

LNCipedia transcript ID: lnc-IL16-12:2 
LNCipedia gene ID: lnc-IL16-12
Ensembl Gene ID: ENSG00000275995
Ensembl Transcript ID: ENST00000619665
Location (hg38): chr15:81403026-81403570
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619665.1
Alternative gene names: ENSG00000275995.1; CTD-2240J17.4; ; AC109809.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -118.0034 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL16-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-IL16-2:3
4.1 TMC3-AS1:15
5.0 TMC3-AS1:15
5.1 lnc-CFAP161-28:2
5.2 lnc-IL16-12:2