Transcript: lnc-IL16-13:1

Basic information

LNCipedia transcript ID: lnc-IL16-13:1 
HGNC Gene Symbol: lnc-IL16-13    
HGNC Full Gene Name: TMC3 antisense RNA 1
Ensembl Gene ID: ENSG00000259343
Ensembl Transcript ID: ENST00000558086
Location (hg38): chr15:81410517-81411267
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 658 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558086.1; CTD-2240J17.1-002; OTTHUMT00000417155.1; NONHSAT047740
Alternative gene names: ENSG00000259372.1; CTD-2240J17.1; OTTHUMG00000172163.1; ENSG00000259372.2; ; ENSG00000259343.6; TMC3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.772 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL16-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL16-3:1
4.0 lnc-IL16-3:1
4.1 TMC3-AS1:17
5.0 TMC3-AS1:17
5.1 lnc-CFAP161-29:1
5.2 lnc-IL16-13:1