Transcript: lnc-IL16-5:1

Basic information

LNCipedia transcript ID: lnc-IL16-5:1 
LNCipedia gene ID: lnc-IL16-5
Ensembl Gene ID: ENSG00000259543
Ensembl Transcript ID: ENST00000559211
Location (hg38): chr15:81427448-81755217
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559211.1; CTD-2034I4.1-001; OTTHUMT00000417157.1; NONHSAT047743
Alternative gene names: ENSG00000259543.1; CTD-2034I4.1; OTTHUMG00000172164.1; AC060809.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5275 non-coding 
CPAT coding probability 8.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL16-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL16-5:1
4.0 lnc-IL16-5:1
4.1 lnc-IL16-5:1
5.0 lnc-IL16-5:1
5.1 lnc-CFAP161-10:1
5.2 lnc-IL16-5:1