Transcript: lnc-IL17A-2:1

Basic information

LNCipedia transcript ID: lnc-IL17A-2:1 
LNCipedia gene ID: lnc-IL17A-2
Ensembl Gene ID: ENSG00000228689
Ensembl Transcript ID: ENST00000454361
Location (hg38): chr6:51605265-51622884
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 610 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454361.1; RP3-335N17.2-001; OTTHUMT00000040891.1; NONHSAT113093
Alternative gene names: ENSG00000228689.1; RP3-335N17.2; OTTHUMG00000014839.1; ENSG00000228689.3; ENSG00000228689.7; AL355997.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -308.8241 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL17A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL17A-2:1
4.0 lnc-IL17A-2:1
4.1 lnc-IL17A-2:1
5.0 lnc-IL17A-2:1
5.1 lnc-EFHC1-13:3
5.2 lnc-IL17A-2:1