Transcript: lnc-IL17A-2:6

Basic information

LNCipedia transcript ID: lnc-IL17A-2:6 
LNCipedia gene ID: lnc-IL17A-2
Ensembl Gene ID: ENSG00000228689
Ensembl Transcript ID: ENST00000587000
Location (hg38): chr6:51621821-51622541
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 288 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000587000.2
Alternative gene names: ENSG00000228689.7; RP3-335N17.2; AL355997.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -322.4557 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL17A-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-IL17A-2:6
4.1 lnc-IL17A-2:6
5.0 lnc-IL17A-2:6
5.1 lnc-EFHC1-13:4
5.2 lnc-IL17A-2:6