Transcript: lnc-IL17B-3:1

Basic information

LNCipedia transcript ID: lnc-IL17B-3:1 
LNCipedia gene ID: lnc-IL17B-3
Ensembl Gene ID: ENSG00000253406
Ensembl Transcript ID: ENST00000523176
Location (hg38): chr5:149216523-149276805
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4533 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523176.1; AC012613.2-001; OTTHUMT00000373887.1; NONHSAT104482
Alternative gene names: ENSG00000253406.1; AC012613.2; OTTHUMG00000163504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.4807 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL17B-3:1 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL17B-3:1
4.0 lnc-IL17B-3:1
4.1 lnc-IL17B-3:1
5.0 lnc-IL17B-3:1
5.1 lnc-FAXDC2-82:1
5.2 lnc-IL17B-3:1