Transcript: lnc-IL17RA-33:2

Basic information

LNCipedia transcript ID: lnc-IL17RA-33:2 
LNCipedia gene ID: lnc-IL17RA-33
Location (hg38): chr22:17037212-17056558
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000414401; ENST00000414401.1; CECR7-002; OTTHUMT00000315824.1; NONHSAT083173; ENST00000414401.5
Alternative gene names: ENSG00000237438; CECR7; ENSG00000237438.1; OTTHUMG00000150027.2; ENSG00000237438.2; ENSG00000237438.6; SAHL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 74.412 coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL17RA-33:2 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-2:2
3.1 lnc-IL17RA-2:2
4.0 CECR7:2
4.1 CECR7:2
5.0 CECR7:2
5.1 lnc-SERPIND1-83:2
5.2 lnc-IL17RA-33:2