Transcript: lnc-IL17RA-36:20

Basic information

LNCipedia transcript ID: lnc-IL17RA-36:20 
LNCipedia gene ID: lnc-IL17RA-36
Location (hg38): chr22:16601911-16648830
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1430 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000400593; ENST00000400593.2; TPTEP1-001; OTTHUMT00000280574.2; NONHSAT083134; NR_001591; ENST00000400593.6
Alternative gene names: ENSG00000100181; AC005301.5; ENSG00000100181.15; TPTEP1; OTTHUMG00000141300.3; ENSG00000100181.17; ENSG00000100181.21


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 113.0286 coding 
CPAT coding probability 45.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL17RA-36:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-4:1
3.1 lnc-IL17RA-4:2
4.0 lnc-IL17RA-4:2
4.1 lnc-IL17RA-4:2
5.0 lnc-IL17RA-4:2
5.1 lnc-SERPIND1-90:20
5.2 lnc-IL17RA-36:20