Transcript: lnc-IL17RA-36:27

Basic information

LNCipedia transcript ID: lnc-IL17RA-36:27 
LNCipedia gene ID: lnc-IL17RA-36
Ensembl Gene ID: ENSG00000267338
Ensembl Transcript ID: ENST00000438850
Location (hg38): chr22:16616170-16617114
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029357; ENST00000438850; ENST00000438850.1; TPTEP1-005; OTTHUMT00000286440.1; NONHSAT083140
Alternative gene names: XLOC_014137; linc-IL17RA-4; ENSG00000100181; AC005301.5; ENSG00000100181.15; TPTEP1; OTTHUMG00000141300.3; ENSG00000267338.1; KB-7G2.9; AP000365.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0379 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL17RA-36:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-5:1
3.1 lnc-IL17RA-5:1
4.0 lnc-IL17RA-5:1
4.1 lnc-IL17RA-4:33
5.0 lnc-IL17RA-4:33
5.1 lnc-SERPIND1-90:27
5.2 lnc-IL17RA-36:27