Transcript: lnc-IL18-1:1

Basic information

LNCipedia transcript ID: lnc-IL18-1:1 
LNCipedia gene ID: lnc-IL18-1
Ensembl Gene ID: ENSG00000254638
Ensembl Transcript ID: ENST00000527589
Location (hg38): chr11:112165197-112172606
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 594 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527589.1; RP11-356J5.4-001; OTTHUMT00000392415.1; NONHSAT024185
Alternative gene names: ENSG00000254638.1; RP11-356J5.4; OTTHUMG00000167007.1; AP002884.4; AP002884.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.9723 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL18-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL18-1:1
4.0 lnc-IL18-1:1
4.1 lnc-IL18-1:1
5.0 lnc-IL18-1:1
5.1 lnc-DRD2-28:1
5.2 lnc-IL18-1:1