Transcript: lnc-IL23A-2:9

Basic information

LNCipedia transcript ID: lnc-IL23A-2:9 
LNCipedia gene ID: lnc-IL23A-2
Ensembl Gene ID: ENSG00000257740
Ensembl Transcript ID: ENST00000546789
Location (hg38): chr12:56308868-56309449
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 437 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546789.1; RP11-977G19.12-001; OTTHUMT00000408703.1; NONHSAT028808
Alternative gene names: ENSG00000257740.1; RP11-977G19.12; OTTHUMG00000170367.1; AC073896.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.4545 non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL23A-2:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL23A-1:1
4.0 lnc-IL23A-1:1
4.1 lnc-IL23A-2:9
5.0 lnc-IL23A-2:9
5.1 lnc-CDK2-34:9
5.2 lnc-IL23A-2:9