Transcript: lnc-IL2RA-3:1

Basic information

LNCipedia transcript ID: lnc-IL2RA-3:1 
LNCipedia gene ID: lnc-IL2RA-3
Ensembl Gene ID: ENSG00000213994
Ensembl Transcript ID: ENST00000427630
Location (hg38): chr10:6197612-6202693
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 438 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427630.1; RP11-414H17.5-001; OTTHUMT00000046624.1; NONHSAT011216
Alternative gene names: ENSG00000213994.3; RP11-414H17.5; OTTHUMG00000017613.1; AL157395.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.3747 non-coding 
CPAT coding probability 17.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL2RA-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL2RA-3:1
4.0 lnc-IL2RA-3:1
4.1 lnc-IL2RA-3:1
5.0 lnc-IL2RA-3:1
5.1 lnc-KLF6-77:1
5.2 lnc-IL2RA-3:1