Transcript: lnc-IL4-1:3

Basic information

LNCipedia transcript ID: lnc-IL4-1:3 
LNCipedia gene ID: lnc-IL4-1
Ensembl Gene ID: ENSG00000230612
Ensembl Transcript ID: ENST00000628061
Location (hg38): chr5:132689724-132723725
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 776 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628061.1
Alternative gene names: ENSG00000230612.3; AC004237.1; AC004039.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.3767 non-coding 
CPAT coding probability 94.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL4-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-IL4-1:3
4.1 lnc-IL4-1:3
5.0 lnc-IL4-1:3
5.1 lnc-PDLIM4-15:3
5.2 lnc-IL4-1:3