Transcript: lnc-INF2-1:6

Basic information

LNCipedia transcript ID: lnc-INF2-1:6 
LNCipedia gene ID: lnc-INF2-1
Ensembl Gene ID: ENSG00000256050
Ensembl Transcript ID: ENST00000540171
Location (hg38): chr14:104681146-104684932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1307 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540171.2; RP11-982M15.6-001; OTTHUMT00000410526.1; NONHSAT040272
Alternative gene names: ENSG00000256050.2; RP11-982M15.6; OTTHUMG00000170816.1; AL583722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7504 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INF2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-982M15.6.1-1:2
4.0 lnc-RP11-982M15.6.1-1:2
4.1 lnc-RP11-982M15.6.1-1:2
5.0 lnc-RP11-982M15.6.1-1:2
5.1 lnc-INF2-1:3
5.2 lnc-INF2-1:6