Transcript: lnc-INIP-1:5

Basic information

LNCipedia transcript ID: lnc-INIP-1:5 
LNCipedia gene ID: lnc-INIP-1
Ensembl Gene ID: ENSG00000226609
Ensembl Transcript ID: ENST00000440009
Location (hg38): chr9:112748902-112750456
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 420 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015870; ENST00000440009.1; RP11-276E15.4-001; OTTHUMT00000053698.1; NONHSAT134025
Alternative gene names: XLOC_007830; linc-C9orf80; ENSG00000226609.1; RP11-276E15.4; OTTHUMG00000020510.1; AL390067.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.6797 non-coding 
CPAT coding probability 11.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INIP-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf80-1:2
3.1 lnc-C9orf80-1:2
4.0 lnc-C9orf80-1:2
4.1 lnc-C9orf80-1:2
5.0 lnc-C9orf80-1:2
5.1 lnc-SLC46A2-5:5
5.2 lnc-INIP-1:5