Transcript: lnc-INSC-2:10

Basic information

LNCipedia transcript ID: lnc-INSC-2:10 
LNCipedia gene ID: lnc-INSC-2
Ensembl Gene ID: ENSG00000254946
Ensembl Transcript ID: ENST00000527770
Location (hg38): chr11:15552855-15591098
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527770; ENST00000527770.1; RP11-531H8.1-001; OTTHUMT00000386597.1; NONHSAT018152
Alternative gene names: ENSG00000254946; RP11-531H8.1; ENSG00000254946.1; OTTHUMG00000165839.1; AC073172.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.9151 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INSC-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INSC-1:1
3.1 lnc-INSC-1:1
4.0 lnc-INSC-1:1
4.1 lnc-INSC-2:10
5.0 lnc-INSC-2:10
5.1 lnc-NUCB2-19:6
5.2 lnc-INSC-2:10