Transcript: lnc-INSC-3:2

Basic information

LNCipedia transcript ID: lnc-INSC-3:2 
LNCipedia gene ID: lnc-INSC-3
Ensembl Gene ID: ENSG00000254661
Ensembl Transcript ID: ENST00000530418
Location (hg38): chr11:15910957-15927443
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530418; ENST00000530418.1; RP11-222N13.1-001; OTTHUMT00000386624.1; NONHSAT018162
Alternative gene names: ENSG00000254661; RP11-222N13.1; ENSG00000254661.1; OTTHUMG00000165844.1; ENSG00000254661.2; AC009869.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.1569 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INSC-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INSC-3:2
3.1 lnc-INSC-3:2
4.0 lnc-INSC-3:2
4.1 lnc-INSC-3:2
5.0 lnc-INSC-3:2
5.1 lnc-NUCB2-17:2
5.2 lnc-INSC-3:2