Transcript: lnc-IPO5-1:2

Basic information

LNCipedia transcript ID: lnc-IPO5-1:2 
LNCipedia gene ID: lnc-IPO5-1
Location (hg38): chr13:98328880-98333238
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 748 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457431.1; FARP1-IT1-001; OTTHUMT00000045538.1; NONHSAT034871
Alternative gene names: ENSG00000225318.1; FARP1-IT1; OTTHUMG00000017246.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -232.766 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IPO5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IPO5-1:2
4.0 lnc-IPO5-1:2
4.1 lnc-IPO5-1:2
5.0 lnc-IPO5-1:2
5.1 lnc-COL4A2-110:20
5.2 lnc-IPO5-1:2